RnoEX0028438 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145947047-145951689:-
Coord C1 exon
chr6:145951495-145951689
Coord A exon
chr6:145949759-145949836
Coord C2 exon
chr6:145947047-145947179
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGACAACTGTCTGTGTGCAGGTT
3' ss Score
9.43
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGCTCATGAGAGCATTGCGAGACTTCAATATGCCTAAAATTGTAACTGATGATGTCCCAGTGTTCCTGGGCCTGGTTAGCGACCTATTTCCAGCCTTGGATGTGCCTCGGCAGAGGAAACCACACTTTGAACAGATGGTCAAGCAGTCTACCCTGGAACTCCGCTTGCAGCCTGAGGAGAGCTTCATCCTCAAA
Seq A exon
GTTGTCCAGCTTGAGGAGCTGCTGGCCGTGCGGCACTCCATCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq C2 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAATGACTTAAACCCCAAGGCTGTGACAACGGATGAACTCTTTGGTTTCATTCATCATGCTACCCGAGAATGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(9.5=50.0)
C2:
PF077289=AAA_5=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGAGGAAACCACACTTT
R:
GTTCATCCGTTGTCACAGCCT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]