HsaEX0020116 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21744052-21747453:+
Coord C1 exon
chr7:21744052-21744246
Coord A exon
chr7:21745078-21745155
Coord C2 exon
chr7:21747317-21747453
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACCAGCTGTTTGCTCTGCAGGTT
3' ss Score
9.71
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTACTCATGAGAGCATTAAGGGATTTCAATATGCCCAAAATAGTGACTGACGACATCCCAGTGTTTCTGGGCCTGGTCGGTGACCTGTTTCCAGCCCTGGATGTGCCCCGGAGGAGGAAGCTGCACTTTGAACAGATGGTCAGGCAGTCTACCCTGGAGCTCCGCCTGCAGCCTGAAGAGAGCTTCATCCTCAAA
Seq A exon
GTTGTCCAGCTTGAGGAACTGTTGGCTGTGCGGCACTCGGTCTTTGTAGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq C2 exon
ATTTTGAGAACACTGAACCGAACATATGTTAACATGAAACAGAAGCCGGTTTGGAATGACTTAAACCCTAAAGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'45-45,'45-44,46-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.9=50.0)
C2:
PF077289=AAA_5=FE(30.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGTTTCCAGCCCTG
R:
TCCAAACCGGCTTCTGTTTCA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)