BtaEX6026632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30482294-30487328:+
Coord C1 exon
chr4:30482294-30482516
Coord A exon
chr4:30487019-30487135
Coord C2 exon
chr4:30487242-30487328
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGCACCTTTGTTTTTGCAGGAA
3' ss Score
10.8
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
CCTGAATGAGCTACAAGAATTTATAAAGGAGACAGATGCTGGACTTCAGAGAGAATTAAGTGAAGGCGATCATGATGGTTTAGTTGACATTATGGAGCATCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAACTCTTTGAACCACTGAAAGAAACCATCACACTCTTGGAAATGTATGGCCAGAAGATGCCTGAGCACGTCTATACTCAGCTAAAG
Seq A exon
GAATTACCTGAAAGATGGGAAACTACCAAAAAGATTGCAGCAGCTGTCAGACACGAGGTCTCACCTCTCCAAAACGCAGAAGTCTCCCTCATAAGGAAAGCGTGTGTTTTGTTTGAT
Seq C2 exon
GAGAAGCAGGCAGAGTTCAGAGAGAGATTCAGATTCTATGCGCCCCTTCGTTTTAATGCAGAAAATCCATATACAGTACTCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACAGATGCTGGACTTCA
R:
AACGAAGGGGCGCATAGAATC
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]