GgaEX1020260 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1055951-1059347:+
Coord C1 exon
chr18:1055951-1056173
Coord A exon
chr18:1057984-1058150
Coord C2 exon
chr18:1058477-1059347
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTTTAAATTTTGCTTGCAGGAG
3' ss Score
8.86
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
CTTGACTGACCTTGAAGAGTTCATAAAAACTGCTGATGAAGGTCTGAGCAAAAAAGTTGAAAAAGGAGATTATGATGGCTTGGTGGAGATTATGGGTCATCTCATGGCCGTTAAAGAAAGGCAGAGTGTCACTGATGCCATGTTTGAGCCCCTGAAGCAAACCGTGGAGCTGCTGAAGGCGTATGAGCAACAGCTGCCCGAGGAAGTCCATAAGCAACTAGAG
Seq A exon
GAGCTGCCAGAAAAATGGAACAATATAAAGAAGCAGGCGATAGCTGTGAAGCAGCATGTGGCTCCTCTGCAGGCAAACGAAATGGCAGCTCTGCGCAGGAGCTGTGCGGCCTTTGATGCTGAGCAGCACAGATTCAGAGAGAGGTTTCGGAAAGAAGCTCCGTTCAG
Seq C2 exon
GTTTGATGCTGAAAAGCCTTATCAACTGCTGGATGCAAAGAACATTGAGATGAAACAAATGGAGTCAGCCATGACCTCGATTTATGAATCAGCTGCTCTGTTTGAAGTCATGGTGCCAGACTGTAAACAACTGAAGCAGTGCAGAAAGGAGATGTGTCTTCTCAAAGAGCTCTGGGATATGATCTCGGTTGTGAACAGCAGCCTTGAGGACTGGCAGACCACCAAATGGGTGGATATTAACGTGGAAAACATGGATCTCGAGTGCAAAAAGTTTGCAAGAGAGATTCGAAATTTGGATAAAGAGATGAGGGCATGGGGTGCTTTCACAGGGCTGGACAGCAGAGTGAAGAACATGCTGACAGCCCTGAAAGCTGTAGCAGAACTTCAAAATCCTGCTATTAGAGAAAGGCATTGGGGTCAACTGATGCAGGTGACGGGTGTGAAGTTCGTGATGGACTCTGACACCACGCTGGCTGATCTTCTGAAGCTCTGCCTGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCGTATGAGCAACAGCT
R:
CCTCAAGGCTGCTGTTCACAA
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]