RnoEX0028639 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52604686-52626314:-
Coord C1 exon
chr10:52626092-52626314
Coord A exon
chr10:52624891-52625057
Coord C2 exon
chr10:52604686-52605556
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTCCCAGGTGTTCTTCACAGGAA
3' ss Score
7.58
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCTGGCTGACCTTGACTCATTCATAAAGAGCACTGAGTGTGGTTTGCTCAAGAGGGTGGAAAAAGGAGATTTCCAGGGATTGGTTGAGATCATGGGACACCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCTGAAACTGTGTTTAAGCAACTGGAG
Seq A exon
GAACTTCCGGAGAAGTGGAAGAATGTGAAGAAGATGGCCATCACTGTGAGGCAGCAGGTGGCCCCTCTACAGGCAAATGAAGTGGCCCTCCTCCGCCAGCGGTGCTCAGCCTTTGATGATGAACAGCAGCAATTCCAGGAGAGGTTCCACAAAGAAGCTCCCTTCAG
Seq C2 exon
GTTTGATAGTATCAATCCACATCAAATGCTAGATGTCTGGCACATGGAGATCCAGCACATGGAATCGACCATGGCAACCATCTCCAAGTCAGCTGATTTGTTTGAAGTCAATGTTCCTGACTACAAGCAGCTGAGGCAGTGCAGAAAGGAGGCCTGTCAGCTAAAGGAACTCTGGGACACCATTGGAATGGTGACTTCCAGTATCCAAGCCTGGGAGGCCACCAGCTGGAGGAATATCAGTGTGGAAGCCATGGACTCAGAGTGCAAGCAGTTCGCCCGGCAAATCCGCAACCTAGATAAGGAGTTCAGAACCTGGGATGCATTCACAGGCCTGGAAAGCACAGTACTGAACACTCTGACCTCCCTGAGGGCCGTGGCTGAGCTGCAGAATCCTGCCATCCGGGAACGGCACTGGAGGCAACTGATGCAGGCCACAGGGGTGAATTTCACCATGGATCGGGACACCACCCTAGCTCACCTCCTGCAGCTTCAGCTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'25-22,'25-20,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGATGACATGTTTGAGCCC
R:
CTCCTTTCTGCACTGCCTCAG
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]