DreEX6020656 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10434831-10438674:-
Coord C1 exon
chr6:10438452-10438674
Coord A exon
chr6:10435929-10436045
Coord C2 exon
chr6:10434831-10434917
Length
117 bp
Sequences
Splice sites
3' ss Seq
AAGCCCATGTGTTTTCACAGGCT
3' ss Score
5.2
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CGTGCAGGAGTTGGGGTCATTCATTGAGAGTACAAATCTTGGTTTGGCAAAGACTGTAACTGATGGGGATTATGGCAAACTGGTGGACATCATGAGCCACCTGAAGGCCATCAGAGACCGCCAGATGAGCACAGAGCAGCTCTTCAGACCCCTCAAAGCTACATCTGACCTGCTGAAAACCTACAACCAACAGCTGCCTGAGCATGTTTACATCCTGCTGGAG
Seq A exon
GCTCTGCCAGAGAAATGGAAGAATCTAAAGAAGGTGGCGTTTACAGTAAAACATGAGGTCGCTCCTCTCCAGTCCAACGAAGTAGCTGTCATACGCAGAAAGTGTGTTCGGTTTGAG
Seq C2 exon
ATTAAACAGCATGAATTCAGAGAGCAGTTCCGCTCTGAACCGATATTCTTCATCAGACTGGAGGAGCCCTACAAACTCATTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGAGTTGGGGTCATTC
R:
GAGCGGAACTGCTCTCTGAAT
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]