HsaEX6007412 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21601396-21606733:+
Coord C1 exon
chr7:21601396-21601618
Coord A exon
chr7:21606426-21606542
Coord C2 exon
chr7:21606647-21606733
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTTTGCTTTTGCAGGAA
3' ss Score
12.21
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
TCTGAATGAGCTACAAGAATTTATAAAGGAGACAGATTCCGGACTTCAGAGAGAATTAAATGAAGGTGATCATGATGGTTTAGTTGACATCATGGTGCATCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAACTCTTTGAACCTCTAAAAGAAACGATCACCCTCTTGGAAAGCTATGGCCAGAAGATGCCTGAGCAGGTCTATATTCAGCTAGAG
Seq A exon
GAATTACCTGAAAGATGGGAAACTACCAAAAAGATCGCAGCAACTGTCAGACATGAAGTCTCACCTCTCCATAATGCGGAAGTCACTCTTATAAGGAAAAAATGTATTTTGTTTGAC
Seq C2 exon
GCAAAGCAGGCAGAGTTCAGAGAGAGATTCAGACACTATGCCCCTCTTGGATTTAATGCAGAAAATCCATACACAGCGCTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACAGATTCCGGACTTCA
R:
TCCAAGAGGGGCATAGTGTCT
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains