RnoEX6030066 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146027672-146040267:-
Coord C1 exon
chr6:146040045-146040267
Coord A exon
chr6:146027860-146027976
Coord C2 exon
chr6:146027672-146027758
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTGCATCTTTTTGTACAGGAA
3' ss Score
7.87
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAACGCAGGACTTCAGAGACAGCCACATGAGGGTGATCACGATGGCTTAGTTGACATCATGGGTCACCTCCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAGGAAACCATCATGCTTCTGGAAAGCTATGGCCAGAAGATGCCTGAGCAAGTCTATGCCCAGCTGGAG
Seq A exon
GAATTACCTGAAAGATGGGAAACCACCAAGAAGATCGCAGCCGTGGTCAGGCATGAGGTCTCGCCACTCCAAAACGCAGAGGTCACTCTTCTAAGGAAAAAATGTATTTTGTTTGAT
Seq C2 exon
GAAAAGCAAGCAGAATTCAGAGAGAGATTTAGGAGCTATGCCCCTCTTGGATTTAAGGCAGAGAATCCATACTCAGTGCTCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000007233fB4251
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACAAACGCAGGACTTC
R:
GCCTTAAATCCAAGAGGGGCA
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]