MmuEX7007653 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118120473-118125961:-
Coord C1 exon
chr12:118125739-118125961
Coord A exon
chr12:118120660-118120776
Coord C2 exon
chr12:118120473-118120559
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCATTGCATCTTTACACAGGAA
3' ss Score
8.06
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAATGCAGGACTTCAGAGACAGCTGTGTGAGGGCGATCATGATGGCTTAGTTGACATCATGGGTCACCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAAGAAACAATCATGCTTCTGGAAAGCTATGGGCAGAAAATGCCCGAGCAAGTCTATGCCCAGCTGGAG
Seq A exon
GAATTACCTGAAAGATGGGAAACCACCAAGAAGATTGCAGCCATGGTCAGACATGAGGTCTCGCCACTCCAAAACGCAGAGGTTACTCTTATACGGAAAAAATGTATTTTGTTTGAT
Seq C2 exon
GAAAAGCAAGCAGAATTCAGAGAGAGATTCAGAAGCTATGCTCCTCTTGGATTTAAGGCAGAGAATCCATACGCAGTGCTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGGGCGATCATGATGG
R:
ACTGCGTATGGATTCTCTGCC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types