GgaEX7009581 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10077049-10077630:+
Coord C1 exon
chr18:10077049-10077271
Coord A exon
chr18:10077341-10077457
Coord C2 exon
chr18:10077544-10077630
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAATGCAGTGTGTGATGCAGGAG
3' ss Score
2.02
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
CCTGCAGGAGCTGGAGGCCTTCATCAAGGAAGCCACCGCTGGCTTGAGCAAGCAGGTGCAAGAAGGAGACTATGATGGACTAGTGGAGGTGATGGGGCACCTGCTGAGGGTGAAGGACCGACAGGCAGCCACCGATGGCATGTTTGGGCCCCTGAAGGAAACCATTGCATTGCTCAGCACGTATGGGGAGGAGATGCCCGAGGAGGTGCACCAGCAGCTCCAG
Seq A exon
GAGCTGCCCGAGCAGTGGGACAACACCAAGAAGCTCTCCTTCCGCGTGAAGCAGAACGTGGCACCTCTGCAAGCAAACGAGGTGAACATCATCCGCAGGAAATGCCAGCAGTTAGAG
Seq C2 exon
GCCCGGCAGCACGCCTTCAGGGAGAAGTTCCGGGAAAAAGCCCCTTTCTCCTACACTGACCCAGAGCCCTACAGAGCCCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.077 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGAGGCCTTCATCAAG
R:
TTCCCGGAACTTCTCCCTGAA
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]