BtaEX6090401 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54341264-54343724:+
Coord C1 exon
chr19:54341264-54341486
Coord A exon
chr19:54343421-54343537
Coord C2 exon
chr19:54343638-54343724
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGGCCTTTACCTGCACAGGAA
3' ss Score
8.9
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCTCGCGGACCTGGAAGCCTTCATGAAAGTTGCCAGGATGGGCTTAACGAAGCCCGTTAAGGAGGGGGATTATGACGGCCTTGTGGAAGTGATGGGGCATCTGATGAAGGTCAAGGAGAGACAGACGGCCACGGACAACATGTTTGAGCCTCTGAAGCAGACCATCGAGCTGCTCAAGTCCTACGGGGAGGAGATGCCCGAGGAGACGCACGTGAAGCTGCAG
Seq A exon
GAACTGCCGGAGCAGTGGACAAACACCAAGAAGCTGGCCCTCCAGGTGAAGCAGAACGTGTCGCCCCTGCAGGCCAACGAGGTCAGCATCCTGAGGCGGAAGTGCCAGCAGTTCGAG
Seq C2 exon
CTCAAGCAGCATGAGTTCAGAGAGAGGTTCAGGCAAGAAGCCCCATTCAGCTTCAGCGACCCCGACCCCTACAAGTCCCTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.051 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTATGACGGCCTTGTGG
R:
ACTGAGGGACTTGTAGGGGTC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]