RnoEX6050785 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107110113-107112531:-
Coord C1 exon
chr10:107112309-107112531
Coord A exon
chr10:107110331-107110447
Coord C2 exon
chr10:107110113-107110199
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTTCGCCTCCCACAGGAG
3' ss Score
9.25
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
CCTTGCCGATCTGGAAAGCTTCATGGGTGTCACCCGGACTGGCCTAAAGAAGCCACTCAAGGAGGGAGACTATGACGGACTGGTGGAGGTTATGGGGCACCTAATGAAGGTCAAGGAGAGGCAGGTGGCCACCGACAGCATGTTCGAACCCCTGAAGCAAACCATCGAACTGCTCAAGTCCTACGGGGAGGAGATGCCGGAGGAGACCTACTTGAAGCTGCAG
Seq A exon
GAGCTTCCAGAGCAGTGGACCAACACCAAGAAACTGGCCATTCAGGTGAAGCAGAATGTGGCGCCACTCCAGGCCAACGAGGTTAACATCCTGAGGCGCAAGTGTCAGCAGTTTGAG
Seq C2 exon
CTCAAGCAGCACGAGTTCAGAGAGAAGTTCAGACGTGATGCCCCCTTCACCTTCAGCGACCCCGACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCACTCAAGGAGGGAGA
R:
TTCAGGGACTTGTAGGGGTCG
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]