HsaEX6025137 @ hg38
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78526651-78529694:-
Coord C1 exon
chr17:78529472-78529694
Coord A exon
chr17:78526880-78526996
Coord C2 exon
chr17:78526651-78526737
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTGCTTCCCGCAGGAG
3' ss Score
10.93
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCTGGCTGACCTGGAAGCCTTCATGAAAGTCGCCAGAATGGGCTTGACCAAGCCCCTCAAGGAGGGGGACTATGATGGGCTTGTGGAGGTGATGGGGCACCTGATGAAAGTCAAGGAGAGGCAAGCAGCCACCGACAACATGTTTGAGCCCCTGAAGCAAACCATCGAGCTGCTCAAGACCTACGGGGAGGAGATGCCAGAGGAGATCCACTTGAAGCTGCAG
Seq A exon
GAGCTGCCGGAGCACTGGGCAAATACCAAGAAACTGGCCATTCAGGTGAAGCTGACCGTGGCACCACTCCAGGCCAACGAGGTCAGCATCCTGCGGCGGAAATGCCAGCAATTCGAG
Seq C2 exon
CTCAAGCAACATGAGTTCAGGGAGAGGTTCAGGCGCGAGGCCCCGTTCTCCTTCAGCGACCCCAACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'29-41,'29-40,31-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGGACTATGATGGGCTT
R:
TCAGGGACTTGTAGGGGTTGG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains