HsaEX6025137 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76522733-76525776:-
Coord C1 exon
chr17:76525554-76525776
Coord A exon
chr17:76522962-76523078
Coord C2 exon
chr17:76522733-76522819
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTGCTTCCCGCAGGAG
3' ss Score
10.93
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCTGGCTGACCTGGAAGCCTTCATGAAAGTCGCCAGAATGGGCTTGACCAAGCCCCTCAAGGAGGGGGACTATGATGGGCTTGTGGAGGTGATGGGGCACCTGATGAAAGTCAAGGAGAGGCAAGCAGCCACCGACAACATGTTTGAGCCCCTGAAGCAAACCATCGAGCTGCTCAAGACCTACGGGGAGGAGATGCCAGAGGAGATCCACTTGAAGCTGCAG
Seq A exon
GAGCTGCCGGAGCACTGGGCAAATACCAAGAAACTGGCCATTCAGGTGAAGCTGACCGTGGCACCACTCCAGGCCAACGAGGTCAGCATCCTGCGGCGGAAATGCCAGCAATTCGAG
Seq C2 exon
CTCAAGCAACATGAGTTCAGGGAGAGGTTCAGGCGCGAGGCCCCGTTCTCCTTCAGCGACCCCAACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGGACTATGATGGGCTT
R:
TCAGGGACTTGTAGGGGTTGG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)