MmuEX6091604 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117962353-117963956:-
Coord C1 exon
chr11:117963734-117963956
Coord A exon
chr11:117962583-117962699
Coord C2 exon
chr11:117962353-117962439
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTCGCCTCCCACAGGAG
3' ss Score
10.23
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
CCTCGCTGATCTGGAAAGCTTCATGAACATCACCCGAACAGCCCTGAAGAAGCCACTTAAGGAGGGAGACTACGACGGGCTGGTAGAGGTCATGGGGCACCTGATGAAAGTCAAGGAGAGGCAGGTGGCCACCGATAGCATGTTTGAGCCCCTGAAGCAAACCATCGAACTGCTCAAGAGCTATGGGGAGGAGATGCCGGAGGAGATCTACTTGAAGCTGCAG
Seq A exon
GAGCTGCCAGAGCAGTGGACCAACACCAAGAAACTGGCCATTCAGGTGAAGCAGAATGTGGCGCCCCTCCAGGCCAACGAGGTTAACATCCTGAGACGAAAGTGCCAACAGTTTGAG
Seq C2 exon
CTCAAGCAGCACGAATTCAGAGAGAAGTTCCGACGTGATGCCCCCTTCTCCTTCAGTGACCCCGAGCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'21-22,'21-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACATCACCCGAACAGCC
R:
GGCATCACGTCGGAACTTCTC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: