MmuEX6086209 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65898116-65908961:-
Coord C1 exon
chr11:65908739-65908961
Coord A exon
chr11:65907507-65907673
Coord C2 exon
chr11:65898116-65898986
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGGTGTCCTTCCCAGGAG
3' ss Score
9.99
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
CCTGTCTGACCTTGACTCATTCATAAGGAGCACCGAGAGTGGTTTGCTCAAGAGGGTGGAGAAAGGAGATTTCCAAGGATTGGTTGAGATCATGGGACATCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCAGAAACCGTGTTTAAGCAACTGGAG
Seq A exon
GAGCTTCCTGAGAAGTGGAAGAACATGAAGAAGATGGCCATCACTGTGAGGCAACAGGTGGCCCCTCTGCAGGCAAATGAAGTGGCCCTACTCCGCCAGCGGTGCTCAGCCTTCGATGATGAGCAGCAGCAATTCCAGGAGAGGTTCCGCAAAGAGGCCCCTTTCAG
Seq C2 exon
GTTTGATAGTATCAATCCACACCAAATGCTGGATGCCTGGCACGTGGAGATCCAGCACATGGAATCCACCATGGCAACCATCTCTAAGTCGGCTGATTTGTTTGAAGTCAATGTTCCTGACTACAAGCAGCTGAGGCAGTGCAGGAAGGAGGCCTGCCAGTTAAAGGAGCTCTGGGACACCATTGGAATGGTGACCTCCAGCATCCGTGCCTGGGAGGCCACCAGCTGGAGGAATATCAGTGTGGAAGCCATGGACTCAGAGTGCAAGCAGTTCGCCCGGCACATCCGCAACCTAGATAAGGAGTTCAGGTCCTGGGATGCATTCACGGGCCTGGAAAGCACAGTGTTGAACACCCTGACGTCCCTGAGGGCTGTGGCGGAGCTGCAGAATCCTGCCATCCGGGATCGGCACTGGAGGCAGCTGATGCAGGCCACCGGGGTGAATTTCACCATGAATCAGGATACCACCTTAGCTCATCTCCTGCAGCTTCAGCTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'19-20,'19-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAACGGCAGAGCAGCAC
R:
GCCTCAGCTGCTTGTAGTCAG
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: