BtaEX6087273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31032165-31043457:+
Coord C1 exon
chr19:31032165-31032387
Coord A exon
chr19:31033200-31033366
Coord C2 exon
chr19:31042587-31043457
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACGCCAGGTCTCCTTGGCAGGAG
3' ss Score
3.74
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTTGGCCGACCTTGAAGCATTTATTAAAAACCGCGAGAATGGCTTGCTCAAGAAAGTCGAAAAAGGAGATTTCCAAGGACTGGTTGAGATCATGGGGCACCTGATGGCTCTTAAAGAACGACAGAGCAGCACCGATGATATGTTTGAGCCTTTAAAGCAAACGATTGAATTGCTGAAGACCTATGGACAAGAATTGCCGGAAACAGTGTTTGAGCAGCTGGAG
Seq A exon
GAGCTGCCCGAGAAGTGGAACAACATTAAAAAGACGGCGGTTACCGTGAGGCAGCAGGTGGCCCCCCTGCAGGCAAATGAAGTGACCCTCCTGCGCCAGCGGTGCACGGCCTTCGAGGCGGAGCAGCAGGCCTTCTGGGAGCGATTCCGTAGAGAAGCGCCCTTCAG
Seq C2 exon
GTTTGATAGCATTGACCCTCACCAGACGCTGGATGCCTGGCACTTGGAGACCCAGCAGATGGAGTCCACCATGGCCTCCATTTCCGCGTCCGCCAGCTTGTTTGAAGTCACCGTCCCTGACTATAAGCAGCTGCGGCAGTGCAGGAAGGAGGCGTGCCGGCTGAAGGAGCTCTGGGACACGATTGGGTTGGTGACCTCCAGCATTCATGCCTGGGAGGCCACCAGGTGGAAGGATATCGACGTGGAGGCCATGGACTTGGAGTGCAAAAGGTTTGCCAGGAACATCCGGAACCTCGACAAGGAGGTCAGGGCCTGGGAGGCCTTCACAGGCCTGGAGAGCACCGTGCTGGACACCCTGACCTCCCTGAGGGCCGTGGCCGAGCTGCAGAACCCGGCCATCCGGGAGCGGCACTGGAGGCAGCTGATGCAGGCCACGGGCGTGACCTTCACCATGGATGAGGGCACCACCCTGGCCCACCTCCTGCAGCTGCAGCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'19-26,'19-25,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACGACAGAGCAGCACC
R:
CGCAGCTGCTTATAGTCAGGG
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]