MmuEX6086209 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66084614-66095459:-
Coord C1 exon
chr11:66095237-66095459
Coord A exon
chr11:66094005-66094171
Coord C2 exon
chr11:66084614-66085484
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGGTGTCCTTCCCAGGAG
3' ss Score
9.99
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
CCTGTCTGACCTTGACTCATTCATAAGGAGCACCGAGAGTGGTTTGCTCAAGAGGGTGGAGAAAGGAGATTTCCAAGGATTGGTTGAGATCATGGGACATCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCAGAAACCGTGTTTAAGCAACTGGAG
Seq A exon
GAGCTTCCTGAGAAGTGGAAGAACATGAAGAAGATGGCCATCACTGTGAGGCAACAGGTGGCCCCTCTGCAGGCAAATGAAGTGGCCCTACTCCGCCAGCGGTGCTCAGCCTTCGATGATGAGCAGCAGCAATTCCAGGAGAGGTTCCGCAAAGAGGCCCCTTTCAG
Seq C2 exon
GTTTGATAGTATCAATCCACACCAAATGCTGGATGCCTGGCACGTGGAGATCCAGCACATGGAATCCACCATGGCAACCATCTCTAAGTCGGCTGATTTGTTTGAAGTCAATGTTCCTGACTACAAGCAGCTGAGGCAGTGCAGGAAGGAGGCCTGCCAGTTAAAGGAGCTCTGGGACACCATTGGAATGGTGACCTCCAGCATCCGTGCCTGGGAGGCCACCAGCTGGAGGAATATCAGTGTGGAAGCCATGGACTCAGAGTGCAAGCAGTTCGCCCGGCACATCCGCAACCTAGATAAGGAGTTCAGGTCCTGGGATGCATTCACGGGCCTGGAAAGCACAGTGTTGAACACCCTGACGTCCCTGAGGGCTGTGGCGGAGCTGCAGAATCCTGCCATCCGGGATCGGCACTGGAGGCAGCTGATGCAGGCCACCGGGGTGAATTTCACCATGAATCAGGATACCACCTTAGCTCATCTCCTGCAGCTTCAGCTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'21-26,'21-25,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAACGGCAGAGCAGCAC
R:
GCCTCAGCTGCTTGTAGTCAG
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types