BtaEX6026653 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015539 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr4:31196052-31212754:-
Coord C1 exon
chr4:31212633-31212754
Coord A exon
chr4:31210646-31210814
Coord C2 exon
chr4:31196052-31196118
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTTTGTTTCCAACAGTGG
3' ss Score
10.53
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAGAAGCTGCGTTGGGTCAGAACTGGTAGACTGGCTTCTGGAGCACTGCCCTTTCGTCCAGTGCAGATCTATGGCCATAGGGGTCTGGCAGCTCCTACTGGACATGGGAATCCTGTCGTCAG
Seq A exon
TGGACCAGCATTTATACTTTCAGGACACCTATGTTTTCTACCAGTTTTCATCTGAGGAGTGTAGCTACTTGTACTGTGAGTTTGAGAGAGAAGAGGAGTGGCAGAACGGCGTCAGACTCTTACTGCAGCTTGTGCCTCTCATTCCCAGCCGCGCTGGCATCTGTGAACT
Seq C2 exon
ATCTCATCAGAAAATTGAAGACTCAGAAGAGAGCAGTGATGAAATTCTTGCCCGTCTAACGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015539-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(59.4=100)
A:
PF0061016=DEP=PD(21.7=26.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGCGTTGGGTCAGAA
R:
AGACGGGCAAGAATTTCATCACT
Band lengths:
178-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]