GgaEX6019219 @ galGal4
Exon Skipping
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30869172-30876823:-
Coord C1 exon
chr2:30876702-30876823
Coord A exon
chr2:30875047-30875215
Coord C2 exon
chr2:30869172-30869238
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTTTTTTCTACCAGTGG
3' ss Score
8.97
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAGAAGCTGTGTTGGATCAGAACTGGTAGACTGGCTGTTGGAGCATTGCCCTTTTGTTAAGTGCAGATCTACTGCAGTTGGAGTGTGGCAGCTGCTTCTGGATATGGGCATTATATTATCAG
Seq A exon
TGGACCGAGAACTCTATTTTCGAGACACTTATACTTTCTACCAGTTCTCAGCGGATGAATGTACCTACCTTTTCTGTGAATTTGAGAAAGAGGGAGGTTGGAAGAATGCTGTAAAGCTCCTACTTCAGCTACTGCCGTTGTCTCCTCCGAGGATCGACGTGTGCAATCT
Seq C2 exon
GCCTGATCAAAAAATAGAAGATACAGCAGAAACCAATGCTGAAATTCTTGCCCGTCTCACTTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910-'8-11,'8-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(59.4=100)
A:
PF0061016=DEP=PD(21.7=26.3)
C2:
NO
Main Skipping Isoform:
ENSGALT00000017745fB11296
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGTGTTGGATCAGAACTG
R:
CAGAAGTGAGACGGGCAAGAA
Band lengths:
186-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]