MmuEX6083385 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118820167-118833780:+
Coord C1 exon
chr12:118820167-118820288
Coord A exon
chr12:118822516-118822684
Coord C2 exon
chr12:118833714-118833780
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGCTTCGAACAGTGG
3' ss Score
5.51
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGAAGCTGTGTGGGGTCAGAGCTGGTCGACTGGCTCCTGGAACACTGTCCTTTTGTCCAGTGTAGATCTATGGCCATTGGAGTCTGGCAGCTCCTACTGGATATGGGGATTATGTCATCCG
Seq A exon
TGGACCAACATCTATACTTTCAAGATAATTATGTTTTCTACCAGTTTTCTTCGGATGAGTGCAGCTACTTGTACTGCGAATTTGAAAGAGAGGAAGAATGGCAGAAGGGAGTGAAGCTATTGCTGGAGCTTGTGCATCTCATTCCTGCAAGAGCTGGCATCTGTGACCT
Seq C2 exon
GTCTCACCAGAAAACGGAAGACTCGGAGGAAAGCAGTGATGAGATTCTTGCTCGGCTAACATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(58.6=100)
A:
PF0061016=DEP=PD(21.4=26.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCTGTGTGGGGTCAGA
R:
GCAGATGTTAGCCGAGCAAGA
Band lengths:
188-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: