MmuEX6083385 @ mm10
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:117581694-117595307:+
Coord C1 exon
chr12:117581694-117581815
Coord A exon
chr12:117584043-117584211
Coord C2 exon
chr12:117595241-117595307
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGCTTCGAACAGTGG
3' ss Score
5.51
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGAAGCTGTGTGGGGTCAGAGCTGGTCGACTGGCTCCTGGAACACTGTCCTTTTGTCCAGTGTAGATCTATGGCCATTGGAGTCTGGCAGCTCCTACTGGATATGGGGATTATGTCATCCG
Seq A exon
TGGACCAACATCTATACTTTCAAGATAATTATGTTTTCTACCAGTTTTCTTCGGATGAGTGCAGCTACTTGTACTGCGAATTTGAAAGAGAGGAAGAATGGCAGAAGGGAGTGAAGCTATTGCTGGAGCTTGTGCATCTCATTCCTGCAAGAGCTGGCATCTGTGACCT
Seq C2 exon
GTCTCACCAGAAAACGGAAGACTCGGAGGAAAGCAGTGATGAGATTCTTGCTCGGCTAACATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'8-13,'8-10,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(58.6=100)
A:
PF0061016=DEP=PD(21.4=26.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCTGTGTGGGGTCAGA
R:
GCAGATGTTAGCCGAGCAAGA
Band lengths:
188-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types