BtaEX6026745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33753926-33763007:+
Coord C1 exon
chr4:33753926-33754104
Coord A exon
chr4:33755119-33755284
Coord C2 exon
chr4:33762433-33763007
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATATATTTACCACTACTTAGACT
3' ss Score
2.44
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAAACTTTATATGTGTGGAATGAGCCTAAGTGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGTCAACCTGTGAAACAGTTGACTTTTGGCTAAAAGTGGGAGCAGGAGTGGGAGCTTTTACAGCCGTTTTGCTGGTGGCTCTAACTTGCTACTTCTGGAAAAAGAATCAGAA
Seq A exon
ACTGGAGTACAAATATTCCAAATTAGTAATGACTACGAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATACTCCAATAAACAGTCCCTACTGGGAAAACTCAAATCCTTGGCAACAAAG
Seq C2 exon
GAAAAAGAAGACCATTTTGAATCTGTTCAACTGAAATCCTCAAGATCTCCAAATATATGAAAAGACAGTGCTGTAGCTGTCAGACTAATGAACAAAGAAACCCACGCTCTAGTTTTACAGAACCATAGTTTAGAGCCTGTCCTCATATCCAGCACATTGGCGATGTTACAGAGGAGGGCCACGCCACTGAGAAGGGAAGGAGGTTGAAGTGTTAGATTGCCTTATCACATGGTCAAGTGTCTTGCCGAAAATAAGAAAGCAAATGGTTTGAGTCTCAACTGAAGATGAAGCTCAACTCAGGAAGAGATTTATCTGTATATACACATAACTCAAAACCAAGGTTAAGCCCACCAGTGCACTGCTGATGCATGCCATATAATTAATGGGTAATTTTTCTTCTTTATAAATTCTATATAAAAAGTGTGTTTGGAGGGCTAATGTGAGCATATGCATTGTGATCCCATGTATGTCTTTTCTTTGTTTATATTTTGGGGAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'30-34,'30-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTTTGCTGGTGGCTCTAA
R:
ACCTCCTTCCCTTCTCAGTGG
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]