GgaEX0009424 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8118532-8124593:+
Coord C1 exon
chr1:8118532-8118710
Coord A exon
chr1:8121379-8121544
Coord C2 exon
chr1:8124534-8124593
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTATGGCTTCCTGTCTTCAGGCT
3' ss Score
7.69
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAACCTTGTATGTATGGAATGAGCCGAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
Seq A exon
GCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCCAGCTGCTGACAGTTGTGCTATAATGGAGGGGGAAGATAATGAAGAAGAAATAGTATATTCTAATAAGCAGTCACTGCTGGGGAAGCTCAAGTCCTTGGCAACAAAG
Seq C2 exon
GAAAAAGAAGATCACTTTGAATCTGTTCAGCTGAAATCTTCAAGATCCCAGAATATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'22-24,'22-22,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTTGTATGTATGGAATGAGCC
R:
TATTCTGGGATCTTGAAGATTTCAGC
Band lengths:
234-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]