MmuEX6015874 @ mm9
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9461322-9479736:+
Coord C1 exon
chr5:9461322-9461500
Coord A exon
chr5:9462869-9463034
Coord C2 exon
chr5:9479196-9479736
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTCTATCTACCCCTGCTTAGGCT
3' ss Score
6.54
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAATATTATATGTATGGAATGAACCTAAGTGGTGCATTAAAGGAATTTCTTTGCCCGAAAAGAAGTTGTCAACCTGCGAAACTGTTGACTTTTGGCTGAAAGTGGGAGCTGGTGTGGGCGCGTTCACAGCCGTTTTGTTGGTGGCTTTAACATGCTACTTTTGGAAAAAGAATCAAAA
Seq A exon
GCTGGAATACAAATATTCTAAATTAGTAATGACGACTAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGATGTTGTATATTCCAACAAACAGTCACTACTAGGAAAACTTAAGTCTTTGGCCACAAAG
Seq C2 exon
GAAAAAGATGACCACTTTGAGTCTGTTCAGCTGAAATCCTCAAGATGCCCCAATATATGAAGAGACAATGCTGTAGCATTCAGGACCCCCATTAGGACTTGTCCTCACATCTGACATGGCTGTGATCTCACAAAGGAGGTGTGCCAATGAGAGGAGGAGGCAAAAATGCTGATTGCCTTATAACATGTCACATACTTTGTCAAACTACAGAAGACAGATGATGTGGGTCTCACTGAAGATGAAGCTTAACTCAGGAAGAGATTTAGCTGTATATACACATAACTGAAACCCAAGTTTAAGCCCACCAATGCACTGCTGAGCATGCCATATGATTACTGGGTAACTTTAATTCTTTATACTGTCTACATACAAAATATGTGTTGGAAGGCAGACATAAACATATGCCTTGTGTTTCCACGTATGTCTTGTTCTTGTACTTTGGGAGAAGATTTGGAAAAAAAATTAAGTTATAATTATTTTTACTTTTCTTTCTCCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'27-24,'27-23,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTGAAAGTGGGAGCTG
R:
CCTCCTCCTCTCATTGGCACA
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: