GgaEX0009424 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7510758-7518502:+
Coord C1 exon
chr1:7510758-7510936
Coord A exon
chr1:7511371-7511536
Coord C2 exon
chr1:7514526-7518502
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTATGGCTTCCTGTCTTCAGGCT
3' ss Score
7.69
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAACCTTGTATGTATGGAATGAGCCAAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
Seq A exon
GCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCCAGCTGCTGACAGTTGTGCTATAATGGAGGGGGAAGATAATGAAGAAGAAATAGTATATTCTAATAAGCAGTCACTGCTGGGGAAGCTCAAGTCCTTGGCAACAAAG
Seq C2 exon
GAAAAAGAAGATCACTTTGAATCTGTTCAGCTGAAATCTTCAAGATCCCAGAATATATGAAGAATTAATGCTGCCTTCAAAGAAAGAAACCTGATTTCTATTTTTACAGGACCATATTTTAAACATATTCTGGCACACATTGCAGTAGTGATCTCAGTGAGAAATGCTCAGCCATTTAGGAAGAAAGAAGACAGGAAGCAAACCAGAAAATTGGATTGCCTTATCATGTGATTGAGTACCTTGCCAAAAAAAAACCAACAACCAAACAAACAGATGCTTGGATTCCATACTGGGAATGAAATTTAACTCAGGAAGAGATATACATACTGCAAATAACGTTATTTTTTTGCATTCACCTGGGCATTGCTTAGGCATGCCATGTGATTTATAGGTACCTTTCATCTCCTATCTCTCCTTCTATACATATTCGTAAGAAATGATTTTCAGAGAGACCTGAATCCTCCTGCAAAGGTTGTGTGTAGTCCTTTAGTAGCATACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'27-30,'27-28,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAGGTTGGAGCTGGTGT
R:
TGGCTGAGCATTTCTCACTGA
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]