DreEX0067782 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8991291-8997554:+
Coord C1 exon
chr18:8991291-8991469
Coord A exon
chr18:8991554-8991719
Coord C2 exon
chr18:8997256-8997554
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTGAGCTCTGATAGGCT
3' ss Score
0.89
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GACACAATTTATGTGTGGACTGAACCTCGGCTGTGCACCAGTGGCCTGACTCTCCCTCTGAAGAGAACGTCTCCATGTGAGGCCATTGATTTCTGGCTGAAGGTGGGCGCTGGGCTCGGGGCGTTTTGTGCTGCTCTGCTCGTCTCCCTGACCTGCTACTTTTGGAAGAAAAACAAAAA
Seq A exon
GCTGGAGTATAAATATTCCAAACTAGTGATGTCTGCCAATAAAGAGTGCGAGTTACCGGCGGCCGACAGCTGTGCCATTATGGAGGGAGAAGCAGAGGAGGAAGAGGAAGCGGTTTATGCCAAGAAGTCATCCCTTCTGGCTAAGCTAAAGGCTGCTGCTACTAAG
Seq C2 exon
GGCAACAAGATGAGCACTGAAGCCGTCCAGCTGAAATTCTCCAATACAGACAAGTCTGTGTGGGGATAAAAGACGAGCGGAGAGAAGGATGAATGGATGGAAGTTCCATATCACACGCAGTGGCCTTAAGAATACAAGGGCACAAGTGTCCGATGAAGAAACAGGGTTAAATTGACGCCTCAGGAACCTGCACGGACTTACTCGTTGAATATTTCTGTCACTATGCAGTTATGTATCATGGATGTGTGTATTTATGTACGTGTGTGTGTGCGCGTATGTGTACGTGTGTGTGTGTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'19-26,'19-25,20-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCCCTGACCTGCTACTT
R:
CGAGTAAGTCCGTGCAGGTTC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]