Special

BtaEX6026793 @ bosTau6

Exon Skipping

Gene
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37370534-37374675:+
Coord C1 exon
chr4:37370534-37370648
Coord A exon
chr4:37371229-37371298
Coord C2 exon
chr4:37374531-37374675
Length
70 bp
Sequences
Splice sites
3' ss Seq
AATGATCTTTAATGTTTCAGAGG
3' ss Score
7.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AATGATATGGGAGGACAGAGAATACTAGTGAATAAGTGGAGCACTTTCCTGAAAGCTAGACTGGTTTGCTCAGTACCAGGCATGAATGGGATTGATACATATTTTGATGAATTAG
Seq A exon
AGGATGTGTTCTTGCTGCATACCAGAGATCATAAGAACCCAGTGATATTTGGACTCTTCAACACTACCAG
Seq C2 exon
TAATATATTTAGAGGCCATGCTATATGTGTTTATCACATGTCTAGCATCCGGGCAGCCTTTAATGGACCATATGCACATAAGGAAGGACCTGAGTACCACTGGTCACTCTATGAAGGAAAAGTACCTTATCCAAGACCTGGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGTTTGCTCAGTACCAGG
R:
AGAGTGACCAGTGGTACTCAGG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]