RnoEX6012452 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17348619-17352840:-
Coord C1 exon
chr4:17352726-17352840
Coord A exon
chr4:17352234-17352303
Coord C2 exon
chr4:17348619-17348763
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTTTCGCTCTTTCAGAGG
3' ss Score
10.63
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AATGACATGGGAGGACAGAGAATCCTGGTGAATAAGTGGAGCACATTCCTCAAAGCACGGCTGGTTTGCTCAGTACCAGGGATGAATGGAATTGACACACACTTTGACGAATTAG
Seq A exon
AGGATGTGTTTTTACTGCCTACCCGAGATCCCAAGAATCCAGTGATATTTGGACTATTTAATACTACCAG
Seq C2 exon
CAATATTTTTAGAGGCCATGCTGTATGTGTGTATCACATGTCAAGTATCCGGGAAGCCTTTAATGGCCCATATGCACATAAAGAAGGCCCTGAATATCACTGGTCACTGTATGAAGGAAAGGTCCCCTACCCAAGGCCTGGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTCAAAGCACGGCTG
R:
TGACCAGTGATATTCAGGGCCT
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]