GgaEX7000172 @ galGal4
Exon Skipping
Gene
ENSGALG00000008509 | SEMA3E
Description
semaphorin-3E precursor [Source:RefSeq peptide;Acc:NP_989573]
Coordinates
chr1:9433760-9435570:+
Coord C1 exon
chr1:9433760-9433874
Coord A exon
chr1:9434172-9434241
Coord C2 exon
chr1:9435426-9435570
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTTATATTTTGCAGAGG
3' ss Score
8.6
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGATATGGGAGGACAGCGGATGCTTGTGAATAAATGGAGCACTTTCCTCAAAACCAGACTAGTTTGTTCTGTGCCTGGGAGAAATGGAATTGATACGCATTTTGATGAATTAG
Seq A exon
AGGATGTGTTTTTGCTGCAAACTCGTGATAACAAAAATCCAGTGATATTTGGCCTCTTCAGCACTACAAG
Seq C2 exon
CAATATATTTAGAGGATATGCTATATGTGTTTACCATATGGCAAGCGTCCGAGCAGCTTTCAATGGACCATATGCTCATAAAGAAGGACCAGAATACCACTGGGCTCTGTACGAAGGGAAAGTACCTTATCCTAGACCTGGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCTGGGAGAAATGGA
R:
TTTCCCTTCGTACAGAGCCCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]