Special

GgaEX7000172 @ galGal4

Exon Skipping

Gene
Description
semaphorin-3E precursor [Source:RefSeq peptide;Acc:NP_989573]
Coordinates
chr1:9433760-9435570:+
Coord C1 exon
chr1:9433760-9433874
Coord A exon
chr1:9434172-9434241
Coord C2 exon
chr1:9435426-9435570
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTTATATTTTGCAGAGG
3' ss Score
8.6
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGATATGGGAGGACAGCGGATGCTTGTGAATAAATGGAGCACTTTCCTCAAAACCAGACTAGTTTGTTCTGTGCCTGGGAGAAATGGAATTGATACGCATTTTGATGAATTAG
Seq A exon
AGGATGTGTTTTTGCTGCAAACTCGTGATAACAAAAATCCAGTGATATTTGGCCTCTTCAGCACTACAAG
Seq C2 exon
CAATATATTTAGAGGATATGCTATATGTGTTTACCATATGGCAAGCGTCCGAGCAGCTTTCAATGGACCATATGCTCATAAAGAAGGACCAGAATACCACTGGGCTCTGTACGAAGGGAAAGTACCTTATCCTAGACCTGGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCTGGGAGAAATGGA
R:
TTTCCCTTCGTACAGAGCCCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]