DreEX6099617 @ danRer10
Exon Skipping
Gene
ENSDARG00000040920 | si:dkey-49n23.1
Description
si:dkey-49n23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-762]
Coordinates
chr22:30876608-30877528:-
Coord C1 exon
chr22:30877414-30877528
Coord A exon
chr22:30877199-30877268
Coord C2 exon
chr22:30876608-30876752
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGCTTATTGTTTATTTTTAGAGG
3' ss Score
7.96
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AATGACATCGGTGGAAAACGAAGCTTGATTAACCGCTGGAGCACCTTCTTGAAGGCCAGACTTGTATGCACAGTTCCAGGACCTGGGGGCATGGACACACACTTTGACGAGCTGG
Seq A exon
AGGACATATTTCTCTTGGAGACTAAGGATCCACAGAATCCAGTCATCTATGGAGTCTTCTCTACCTCCAG
Seq C2 exon
CTCTGTCTTCAGGGGTTCGGCAGTTTGTGTCTATTCCATGGCTTCCATCCGAGCTGCATTTAACGGGCCCTTTGCGCATAAGGAGAGTCCCGATTATCGCTGGATGGAGTACAAGGGGAAAATCCCTTATCCACGGCCTGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040920-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.5=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGGTGGAAAACGAAGCT
R:
CCCGTTAAATGCAGCTCGGAT
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]