RnoEX6037498 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116445996-116446635:-
Coord C1 exon
chr8:116446521-116446635
Coord A exon
chr8:116446285-116446354
Coord C2 exon
chr8:116445996-116446140
Length
70 bp
Sequences
Splice sites
3' ss Seq
CACCTTCGCCTCTTTTTCAGAGG
3' ss Score
8.68
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AACGATGACGGTGGCCATTGCTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCACGGCTCGTCTGCTCTGTGCCAGGCGAGGATGGCATTGAGACCCACTTCGATGAACTCC
Seq A exon
AGGACGTGTTTGTCCAGCAGACCCAGGACGTCAGGAACCCAGTCATTTATGCTGTCTTCACCTCTTCAGG
Seq C2 exon
CTCTGTGTTCCGAGGATCTGCAGTGTGTGTCTACTCTATGGCTGACATCCGCATGGTCTTCAATGGGCCTTTTGCTCACAAGGAGGGCCCCAACTACCAGTGGATGCCTTTCTCAGGAAAGATGCCGTATCCCCGGCCTGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'19-15,'19-14,20-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.0=100)
A:
PF0140314=Sema=FE(4.9=100)
C2:
PF0140314=Sema=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGGTCAACAAGTGGAG
R:
TGTGAGCAAAAGGCCCATTGA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]