HsaEX6056152 @ hg38
Exon Skipping
Gene
ENSG00000001617 | SEMA3F
Description
semaphorin 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr3:50182904-50183563:+
Coord C1 exon
chr3:50182904-50183018
Coord A exon
chr3:50183186-50183255
Coord C2 exon
chr3:50183420-50183563
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCCTCTGTCCCCAGAGG
3' ss Score
12.75
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
AACGATGACGGTGGTCACTGTTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGATGAGCTCC
Seq A exon
AGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTCTGG
Seq C2 exon
CTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617-'27-22,'27-19,30-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.8=100)
A:
PF0140314=Sema=FE(4.9=100)
C2:
PF0140314=Sema=PD(14.6=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGTTGCCTGGTCAACA
R:
CCCGTTGAAGACCATGCGAAT
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains