GgaEX7007714 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3183213-3183915:+
Coord C1 exon
chr12:3183213-3183327
Coord A exon
chr12:3183532-3183601
Coord C2 exon
chr12:3183771-3183915
Length
70 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCCTTCTGTCCCAAGAGG
3' ss Score
6.83
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCGGCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACACACTTTGATGAGCTTC
Seq A exon
AGGACGTCTTCATCCAGCAGACTCAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGG
Seq C2 exon
GTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCATGGTGTTCAATGGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCCCGGCCGGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'15-23,'15-20,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.041
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGCCTGGTGAACAAAT
R:
GAAGGGCCCATTGAACACCAT
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]