BtaEX0031855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50737217-50737862:-
Coord C1 exon
chr22:50737748-50737862
Coord A exon
chr22:50737527-50737596
Coord C2 exon
chr22:50737217-50737361
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTTCTATCCCCAGAGG
3' ss Score
11.61
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
AATGATGACGGCGGCCACTGCTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCAAGGCTGGTCTGCTCTGTGCCAGGCGAGGATGGCATCGAGACCCACTTCGACGAGCTCC
Seq A exon
AGGATGTGTTTGTCCAGCAGACCCAGGATGTGAGGAACCCAGTCATCTACGCTGTCTTCACCTCCTCGGG
Seq C2 exon
CTCTGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGACATCCGCATGGTCTTCAATGGGCCCTTTGCCCACAAGGAGGGCCCCAACTACCAGTGGATGCCCTTCTCAGGAAAGATGCCCTACCCACGGCCCGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307-'12-16,'12-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.0=100)
A:
PF0140314=Sema=FE(4.9=100)
C2:
PF0140314=Sema=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGGTCAACAAGTGGAG
R:
CAAAGGGCCCATTGAAGACCA
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development