GgaEX6009858 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:2485572-2486052:+
Coord C1 exon
chr12:2485572-2485686
Coord A exon
chr12:2485760-2485829
Coord C2 exon
chr12:2485908-2486052
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCACCCTCTCCGCAGAGG
3' ss Score
12.24
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AACGACGTCGGAGGGAAGCGTGGCCTCATCAACCGCTGGAGCACATTCCTCAAGGCCCGCCTGCTGTGCTCCATCCCCGGGCCCCAGGGCACGCAGACACACTTTGACCAGTTGG
Seq A exon
AGGACGTTTTCCTCCTCCACACACGAGACCCCCAGAACCCCCTCGTCTTCGGCCTCTTCACGGCATCCAG
Seq C2 exon
CGCTGTGTTCAGCGGCTCCGCCGTCTGCGTCTACTCCATGGCTGCAGTCAGAGCAGCCTTCAGCGGCCCCTTCGCGCACAAGGAGGGCTTCGACCACCGCTGGGTGCAGTACAAGGGCCGCGTCCCCTACCCCCGCCCTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(5.3=100)
C2:
PF0140314=Sema=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCGCTGGAGCACATTC
R:
GTCGAAGCCCTCCTTGTGC
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]