HsaEX6056152 @ hg19
Exon Skipping
Gene
ENSG00000001617 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:10728]
Coordinates
chr3:50220337-50220996:+
Coord C1 exon
chr3:50220337-50220451
Coord A exon
chr3:50220619-50220688
Coord C2 exon
chr3:50220853-50220996
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCCTCTGTCCCCAGAGG
3' ss Score
12.75
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
AACGATGACGGTGGTCACTGTTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGATGAGCTCC
Seq A exon
AGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTCTGG
Seq C2 exon
CTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.7=100)
A:
PF0140314=Sema=FE(4.9=100)
C2:
PF0140314=Sema=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGTTGCCTGGTCAACA
R:
CCCGTTGAAGACCATGCGAAT
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)