DreEX6002723 @ danRer10
Exon Skipping
Gene
ENSDARG00000034300 | sema3c
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
Coordinates
chr4:22910647-22915285:+
Coord C1 exon
chr4:22910647-22910761
Coord A exon
chr4:22911807-22911876
Coord C2 exon
chr4:22915141-22915285
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTTTTTGCATGCAGAAA
3' ss Score
9.12
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AATGACACTGGTGGTCAACGTAGTCTGGTGAACAAGTGGACCACATTTCTTAAGGCTCGAATGGTGTGTTCAGTTCTAGAGGAGGACGGGACTGAGACACACTTTGATGAGCTTG
Seq A exon
AAAATGTGTTTTTATTGGAGACGGACCACCCAAAGGGCCTCCTCATCTTTGGAGTCTTCACCTCCACAAG
Seq C2 exon
CTCTGTGTTCAGAGGCTCTGCTGTCTGTGTGTACAACATGGCCGACATCCTGACAGTCTTCAACGGGCCGTTTGCACACAGGGAAGGGCCCAACTTCCAGTGGGTGGCTTTCCAGGGCCGCATCCCATACCCACGACCGGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034300-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCGAATGGTGTGTTCAGT
R:
AAAGCCACCCACTGGAAGTTG
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]