BtaEX6026862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006138 | SEMA3C
Description
Bos taurus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001101082]
Coordinates
chr4:40277880-40282875:+
Coord C1 exon
chr4:40277880-40277994
Coord A exon
chr4:40280608-40280677
Coord C2 exon
chr4:40282731-40282875
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTCCCTCTTACAGAGG
3' ss Score
10.09
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATGACACAGGTGGACTGCGCAGCCTTGTCAACAAGTGGACAACTTTCTTAAAAGCGAGGCTGGTGTGCTCGGTAACCGATGAAGATGGCCCAGAGACACACTTTGATGAATTAG
Seq A exon
AGGATGTGTTTCTGCTGGAAATGGATAACCCAAGGACAACGCTAGTGTATGGCATTTTTACAACATCAAG
Seq C2 exon
CTCAGTTTTTAAAGGATCAGCAGTATGTGTGTATCATTTCTCTGATATACAGACTGTGTTTAATGGGCCTTTTGCACACAAAGAAGGGCCCAATCATCAGCTGATTTCCTACCAGGGGAGAATTCCGTATCCTCGCCCTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006138-'12-15,'12-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACCGATGAAGATGGCCC
R:
ACGGAATTCTCCCCTGGTAGG
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]