MmuEX6016008 @ mm10
Exon Skipping
Gene
ENSMUSG00000028780 | Sema3c
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:MGI Symbol;Acc:MGI:107557]
Coordinates
chr5:17676311-17682083:+
Coord C1 exon
chr5:17676311-17676425
Coord A exon
chr5:17678312-17678381
Coord C2 exon
chr5:17681939-17682083
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTTCCTTTGTATAGAGG
3' ss Score
7.53
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AATGACACTGGTGGACAACGTAGTCTTGTCAACAAGTGGACCACATTCTTAAAGGCAAGACTTGTATGCTCAGTCACAGATGAAGATGGCCCAGAGACACATTTTGATGAACTAG
Seq A exon
AGGATGTCTTTCTGCTGGAAACTGACAATCCAAGGACAACACTCGTGTATGGCATCTTCACCACATCAAG
Seq C2 exon
CTCTGTTTTTAAGGGATCGGCAGTGTGTGTGTATCATTTATCTGATATACAGACTGTATTCAATGGGCCCTTTGCCCACAAGGAAGGGCCCAATCACCAGCTGATCTCCTATCAAGGTAGAATCCCATATCCTCGCCCAGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028780-'17-16,'17-14,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGCCCAGAGACACA
R:
CCTGGGCGAGGATATGGGATT
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types