RnoEX6012403 @ rn6
Exon Skipping
Gene
ENSRNOG00000006526 | Sema3c
Description
semaphorin 3C [Source:RGD Symbol;Acc:1309343]
Coordinates
chr4:14374660-14379972:-
Coord C1 exon
chr4:14379858-14379972
Coord A exon
chr4:14378295-14378364
Coord C2 exon
chr4:14374660-14374804
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTTTCCTTGTTCAGAGG
3' ss Score
9.81
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATGACACTGGTGGACAACGTAGTCTTGTCAACAAGTGGACCACATTCTTAAAGGCAAGGCTTGTGTGCTCAGTCACAGATGAAGATGGCCCAGAGACACATTTTGATGAACTAG
Seq A exon
AGGATGTTTTCCTGCTGGAAACGGACAACCCAAGAACAACACTTGTGTATGGCATCTTCACAACATCAAG
Seq C2 exon
CTCTGTTTTTAAAGGATCAGCTGTGTGTGTGTATCATTTATCTGATATACAGACTGTATTCAATGGGCCTTTTGCCCACAAGGAAGGGCCCAATCACCAACTGATATCCTATCAAGGTAGAATTCCATATCCTCGTCCTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006526-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.6=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGGCAAGGCTTGTGTGCT
R:
CAGTTGGTGATTGGGCCCTTC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]