GgaEX6000441 @ galGal3
Exon Skipping
Gene
ENSGALG00000008455 | SEMA3C
Description
NA
Coordinates
chr1:12011618-12017237:+
Coord C1 exon
chr1:12011618-12011732
Coord A exon
chr1:12013353-12013422
Coord C2 exon
chr1:12017093-12017237
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTGTTTTTCAGAGG
3' ss Score
10.77
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATGATACAGGTGGTCAGCGTAGTCTTGTGAACAAGTGGACTACATTCTTGAAAGCAAGACTGGTGTGCTCAGTAATGGATGAAGATGGAACAGAAACATACTTTGATGAGTTAG
Seq A exon
AGGATGTGTTTCTTTTGGAGACAGATAACCCCAGAACAACACTTGTGTATGGAATTTTTACAACATCAAG
Seq C2 exon
CTCCATTTTTAAAGGCTCAGCTGTGTGTGTGTATCATTTGTCTGACATCCAGACTGTGTTCAATGGGCCATTTGCACACAAGGAGGGCCCAAACCATCAGCTGATTCCATATCAGGGCAGAATTCCGTACCCACGACCTGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008455-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.8=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCAGCGTAGTCTTGTG
R:
TGGCCCATTGAACACAGTCTG
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]