BtaEX6026857 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006138 | SEMA3C
Description
Bos taurus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001101082]
Coordinates
chr4:40326229-40338572:+
Coord C1 exon
chr4:40326229-40326270
Coord A exon
chr4:40329468-40329625
Coord C2 exon
chr4:40338505-40338572
Length
158 bp
Sequences
Splice sites
3' ss Seq
CACCGTCATTCTTCTGATAGCAA
3' ss Score
6.36
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AATCATGCTCCTATAACAACAATGAAGATTTCATCCAAAAAG
Seq A exon
CAACAGCTGTATGTGAGCTCCAATGAAGGACTTGCCCAAGTGTCTCTGCATCGCTGCCACATCTACGGGTCAGCCTGTGCTGACTGCTGCCTGGCAAGGGATCCTTACTGTGCCTGGGATGGCCATTCTTGCTCTAGGTTCTATCCAACCGGAAAGCG
Seq C2 exon
GAGGAGCCGAAGACAAGATGTGAGACATGGAAACCCACTGACTCAATGCAGAGGATTTAACCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006138-'18-23,'18-21,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATGCTCCTATAACAACAATGAA
R:
TAGGTTAAATCCTCTGCATTGAGTCA
Band lengths:
106-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]