DreEX0065032 @ danRer10
Exon Skipping
Gene
ENSDARG00000034300 | sema3c
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
Coordinates
chr4:22923983-22926466:+
Coord C1 exon
chr4:22923983-22924024
Coord A exon
chr4:22924217-22924374
Coord C2 exon
chr4:22926399-22926466
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTGTTTGTGTTCCAGCAA
3' ss Score
8.55
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
ACACAGTCTCCCATTACCAACCTAAGAATCTCCTCTAAAAAG
Seq A exon
CAACAGCTGTATGTTAGCTCTGAGCATGGGATCTCCCAGGTGTCTTTACACCGCTGCAATGCATACGGCTCTGCCTGTGCGGACTGCTGTTTAGCACGGGACCCTTACTGCGCCTGGGATGGTCTCAGCTGTTCCCGATTCTATCCCACTGGCAAAAG
Seq C2 exon
GAGAAGCAGAAGGCAGGATATTATGCATGGAAATCCACTGACTCAGTGCAGAGGGTTCAATCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034300-'11-15,'11-13,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(3.2=100)
A:
PF0140314=Sema=PD(0.1=0.0),PF0143720=PSI=PU(66.0=64.8)
C2:
PF0143720=PSI=PD(32.1=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTCTCCCATTACCAACC
R:
CAGATTGAACCCTCTGCACTGA
Band lengths:
106-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]