HsaEX0057061 @ hg19
Exon Skipping
Gene
ENSG00000075223 | SEMA3C
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:HGNC Symbol;Acc:10725]
Coordinates
chr7:80380585-80390973:-
Coord C1 exon
chr7:80390932-80390973
Coord A exon
chr7:80387647-80387804
Coord C2 exon
chr7:80380585-80380652
Length
158 bp
Sequences
Splice sites
3' ss Seq
CATCATCATTCCTTTAATAGCAA
3' ss Score
6.53
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
AATCATGCTCCTATAACAACAATGAAAATTTCATCTAAAAAG
Seq A exon
CAACAGTTGTATGTGAGTTCCAATGAAGGGGTTTCCCAGGTATCTCTGCACCGCTGCCACATCTATGGTACAGCCTGTGCTGACTGCTGCCTGGCGCGGGACCCTTATTGCGCCTGGGATGGCCATTCCTGTTCCAGATTCTACCCAACTGGGAAACG
Seq C2 exon
GAGGAGCCGAAGACAAGATGTGAGACATGGAAACCCACTGACTCAATGCAGAGGATTTAATCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075223_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATGCTCCTATAACAACAATGAA
R:
TAGATTAAATCCTCTGCATTGAGTCA
Band lengths:
106-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)