GgaEX6000438 @ galGal4
Exon Skipping
Gene
ENSGALG00000008455 | SEMA3C
Description
semaphorin-3C precursor [Source:RefSeq peptide;Acc:NP_989574]
Coordinates
chr1:10972773-10977081:+
Coord C1 exon
chr1:10972773-10972814
Coord A exon
chr1:10974023-10974180
Coord C2 exon
chr1:10977014-10977081
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATTTCCTTCTACAGCAA
3' ss Score
10.37
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTAATTCTCCTATAACAACAATGAAGATTTCATCTAAAAAG
Seq A exon
CAACAGCTGTACGTGAGCTCAGAGGAAGGGGTCACACAGGTCCCCTTGCACCGCTGCCACATCTATGGGACTGCCTGTGCTGACTGTTGCCTCGCCCGAGACCCGTACTGCGCCTGGGATGGCAACTCCTGCTCCAGGTTCTATCCCACAGGGAAAAG
Seq C2 exon
GAGGAGTCGTAGGCAAGACGTGAGACATGGAAACCCTCTGACTCAGTGCCGAGGTTTCAACCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008455-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]