RnoEX0079272 @ rn6
Exon Skipping
Gene
ENSRNOG00000006526 | Sema3c
Description
semaphorin 3C [Source:RGD Symbol;Acc:1309343]
Coordinates
chr4:14326901-14344044:-
Coord C1 exon
chr4:14344003-14344044
Coord A exon
chr4:14340399-14340556
Coord C2 exon
chr4:14326901-14326968
Length
158 bp
Sequences
Splice sites
3' ss Seq
CATCGTGGTTTTTCTTATAGCAA
3' ss Score
7.99
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AATCATGTTCCTATAACAACAATGAAAATCTCATCCAAAAAG
Seq A exon
CAACAGTTGTACGTGAGCTCCAATGAGGGGGTTTCCCAAGTCTCTCTGCATCGTTGCCATATCTACGGCACAGCCTGTGCAGACTGCTGCCTGGCAAGGGACCCATACTGCGCCTGGGATGGCCACTCCTGCTCTAGGTTCTACCCCACTGGGAAACG
Seq C2 exon
AAGGAGCCGAAGACAAGACGTGAGACACGGGAATCCATTGACACAGTGCCGAGGGTTCAATCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006526-'17-25,'17-22,18-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAATGAAAATCTCATCCAAAAA
R:
CAGATTGAACCCTCGGCACTG
Band lengths:
91-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]