BtaEX6026926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44148156-44149466:+
Coord C1 exon
chr4:44148156-44148257
Coord A exon
chr4:44148429-44148528
Coord C2 exon
chr4:44148951-44149466
Length
100 bp
Sequences
Splice sites
3' ss Seq
TACAGCTGTTTCCCTTTTAGCCC
3' ss Score
8.37
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTACAGGTCAGAAGATCTGTCGACTTTGGGATCATCCTGTTAGTTCTAATATAATTTCCCGGAACCATGTAAAGCGACTGCTTCAGAACTACAACAAACAG
Seq A exon
CCCTGGAGTTCTGTAATGGACAAGTCGTCATTCAGTGTAGAATTTCTGCCTCTGAACTACTTCATTCACATCCTGACAGACATCGAGTCCTCCAATCCAG
Seq C2 exon
CTCTGTATGCTTTTGAAGGACATGACAATGTGGATGCAAAATTTGTAGAGGAAGCAGCTCTGAAACACACCGCAATGCTTTTAGGATTATAAAGAGAAAATACAGTTATATCTGCTTCCAATATTTTAATCTTGCTTATTAGCTCCATTCTCATTGAGAATTCTTTAGCGATATTTTATATTGGTAACCAAAGTCAGAGTACCTTGTTGAGCCCTCTGAAGGTCAGTTTAATAATACTTTGTTCAGCTAGAACTAAACCATTGTGCTTTATCCCATTTTGAACAGCAGATGAACAGTCAAGTGTAGAGAAATGACAACCTGTCCAAGGAGGTATGCAATGGTGTAAATTCTTCCAAGTGACTGATCTTCCTAGTACTCTCATAGGCCAAAAGTTAGCTTCTGTTATACTCTGAAATAAAATATGCTTCAAAAATGCAGGAACAGTGCTTAGAAAAACAAAAATTAGATGTGTCATTATGTGACAAGCAGAAAAATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'38-33,'38-32,39-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAACCATGTAAAGCGACT
R:
AGGGCTCAACAAGGTACTCTGA
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]