RnoEX0040224 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10423139-10425070:-
Coord C1 exon
chr4:10424969-10425070
Coord A exon
chr4:10424713-10424772
Coord C2 exon
chr4:10423139-10424311
Length
60 bp
Sequences
Splice sites
3' ss Seq
CAAGTCATCATTTCCAGTAGAAT
3' ss Score
1.7
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CTTATTGGCCAGAAGGTCTGTCGGCTTTGGGACCATCCCATGAGTTCCAACATCATTTCACGGAACCACGTGGCCCAGCTTCTGAAGAACTACAAGAAAGAG
Seq A exon
AATTTCTTCCTCTGAACTACTTCATTGAAATTCTGATGCACCTGGAGTCCTCCAACCAAG
Seq C2 exon
CACTACATGGCTTTGAAGGACATGACAATGTGGATGCAGAATTTGTAGAGGAAGCTGCTCTGAAACACACCACCTCACTTTTGGGCTTATGAACATCCAGATGACCAGTTCCAACACTTCGCCTCCCTTTCCTGGGGAGTCTTCAACTGTCTTTAAGAGTGGTAACAGCTCAGAATATACTGCAGGGCTGTTGGGCTTCTGTATAGTTCTTATTCAGAGGCAGTGGCCACGCCTCTCAGTTCGAGCAGCCAGTAAACAGCCAAGAGGAAAGAACAAGTCCAAGGCTGTGCACTGTGGCAGGCACAGCGCCCTTCCTGGGGGCCCAGCAGGCCGGGAACTGGTTCTGTTGCACTACAGAATCTAATAAAAAACAGAGGACCATGCTCAGAGCAGTAAGAGCCAGGCAGATCACTGGAAGGAAGGTAAAACAAGCAGAAAAAGTGACTGTCTCGAAGAGGATTTCAGAAGAACCTGAAACTGGAGTAAACAAGATGTCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'40-51,'40-50,41-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF056127=DUF781=FE(37.5=100)
A:
PF056127=DUF781=PD(13.6=35.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCATCCCATGAGTTCCAAC
R:
GTGGTGTGTTTCAGAGCAGCT
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]