GgaEX0012053 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12530224-12533438:+
Coord C1 exon
chr1:12530224-12530285
Coord A exon
chr1:12532285-12532378
Coord C2 exon
chr1:12533338-12533438
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGAAATGTTTTCACTTGCAGTGT
3' ss Score
9.55
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATCTGGATGACAATGAGAAGAATGAAAAGCTGAAATTCAGTATTGTGACAAGGCTTCCCGAG
Seq A exon
TGTAGCAGGCCTGTCCCTGAGAGACACCCAGTCTGTGTAGAATTTTTGCCTCTTAACTACCTGACTAATGTGCTGGCAGAGATAGAGAGTCAAG
Seq C2 exon
GTGTGCATCTGTATGAAAAACAAGATCACATTAATGTCAGGTTTGTGGAGGAAGCAGCACTGAAACACACGATGATGCTCTTGGGCCTCAGATATTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGACAATGAGAAGAATGA
R:
GGAATATCTGAGGCCCAAGAGC
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]